青海湖裸鲤ACSL基因家族的全基因组分析及其盐碱胁迫响应

GENOMIC ANALYSIS OF THE ACSL GENE FAMILY IN THE GYMNOCYPRIS PRZEWALSKII AND ITS RESPONSE TO SALINE-ALKALI STRESS

  • 摘要: 为探究长链酰基辅酶A合成酶(ACSL)基因家族在青海湖裸鲤(Gymnocypris przewalskii)盐碱适应中的作用, 研究基于裸鲤全基因组数据对ACSL家族进行了系统鉴定, 并分析了盐碱胁迫(盐度16.67‰, 碱度32 mmol/L)条件下ACSL家族的组织特异表达模式。结果显示, 青海湖裸鲤ACSL基因家族包含 9个成员(ACSL1a、ACSL1b、ACSL2、ACSL3a、ACSL3b、ACSL4a、ACSL4b、ACSL5、ACSL6), 分别编码640—834个氨基酸。Motif和结构域分析表明, 除ACSL3a (缺失motif6、motif10)和ACSL3b (缺失motif10)外, 其余成员均拥有10个motif。9个ACSL基因分布于9条染色体(Chr8、13、15、40、41、48、64、82、87)。所有ACSL蛋白均为亲水性蛋白, 其中ACSL4b产物为酸性蛋白质, 其余均为碱性蛋白质。除ACSL2ACSL3a外, 其余均为稳定蛋白。亚细胞定位预测结果显示, ACSL2定位于细胞质, ACSL3a、ACSL3b、ACSL4a、ACSL4b定位于过氧化物酶体, 其余均定位于细胞膜。qRT-PCR结果显示, ACSL基因家族成员表现出不同的组织分布模式, ACSL3bACSL4bACSL5在肾脏中高表达, ACSL3aACSL4aACSL5在肠道中高表达。盐碱胁迫后, ACSL2、ACSL3a、ACSL6在鳃组织中显著上调, ACSL1a、ACSL2、ACSL3a、ACSL5在肾脏组织中显著上调, ACSL3b、ACSL6在肠道组织中表达显著上调。研究揭示了青海湖裸鲤ACSL基因家族在盐碱胁迫下通过脂代谢供能、维持渗透平衡及免疫调控的多种生理功能。

     

    Abstract: This study delves into the significance of the long-chain acyl-CoA synthetase (ACSL) gene family in Gymnocypris przewalskii under saline-alkaline stress, conducting bioinformatics analysis on the genome date and exploring saline-alkaline responses through gene expression detection. The results showed that nine ACSL gene family members encoding proteins ranging from 640 to 834 amino acids. Despite notable differences in gene structure, motif and domain analysis showcased a high level of conservation among these members. Chromosome mapping revealed the dispersion of ACSL gene family members across nine chromosomes (Chr8, 13, 15, 40, 41, 48, 64, 82, and 87), all encoding hydrophilic properties. Except for ACSL2 and ACSL3a, the rest are stable proteins. The product of ACSL4b is an acidic protein, while all others are basic. Subcellular localization prediction results indicated that ACSL2 is localized to the cytoplasm, ACSL3a, ACSL3b, ACSL4a, and ACSL4b to the peroxisome, and the rest to the cell membrane. qRT-PCR analysis revealed tissue-specific expression patterns of ACSL genes in Gymnocypris przewalskii, with ACSL3b, ACSL4b, and ACSL5 being highly expressed in the kidney, while ACSL3a, ACSL4a, and ACSL5 exhibited elevated expression in the intestine. Under saline-alkali stress, high level expression of ACSL2, ACSL3a, and ACSL6 was detected in the gill, and transcription of ACSL1a, ACSL2, ACSL3a, and ACSL5 were markedly up-regulated in the kidney. In the intestine, expressions of ACSL3b and ACSL6 were prominently up-regulated. These findings highlight the ACSL gene family in Gymnocypris przewalskii contributes to multiple physiological functions under saline-alkaline stress, including energy supply through lipid metabolism, maintenance of osmotic balance, and immune regulation.

     

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